The pricing scheme for Highway 6 is based on the number of segments a driver passes in a given trip. Each "segment" is determined by the road span between two interchanges; and as of March 2006, the pricing for up to three segments is 15.04 NIS, 17.94 NIS for four segments, and 20.84 NIS for five or more segments. Prices differ for motorcyclists and trucks, but these prices are for drivers who register with the Highway 6 system and install the in-vehicle transponder unit to record their highway usage.
When a vehicle does not have a transponder, its license plate is scanned and the vehicle identified. If a license plate is not in the Highway 6's database, the bill is sent to the owner of the vehicle based on records from the Israeli Ministry of Transportation. These users pay a rate that is forty to eighty percent higher than users who have registered with the system and have activated their vehicle's transponder.